Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12451225 chr17:50316095 T/C 6.48E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs12451524 chr17:59494535 C/T 6.07E-7 178 25.67 24.5 9.6 KM Plot
PCPG rs12464159 chr2:24311700 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs12465330 chr2:24330569 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs12467837 chr2:24346694 A/G 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs12469551 chr2:136510012 T/G 0.000485 175 11.73 28.3 25.08 KM Plot
PCPG rs12470863 chr2:191457506 G/C 0.000458 176 25.87 24.23 27.18 KM Plot
PCPG rs12473488 chr2:24330208 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs12473517 chr2:24330282 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs12474290 chr2:24336195 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs12477307 chr2:239110514 G/T 2.02E-5 171 33.32 20.28 18.7 KM Plot
PCPG rs12482014 chr21:34611318 C/T 0.000286 176 21.9 31.2 25.08 KM Plot
PCPG rs12482193 chr21:34611545 T/C 0.000286 175 23.43 31.2 25.08 KM Plot
PCPG rs12482556 chr21:34602934 T/C 0.000233 170 24.17 31.97 25 KM Plot
PCPG rs12489048 chr3:113776150 A/G 9.53E-5 178 25.77 21.55 17.27 KM Plot